CIESC Journal ›› 2013, Vol. 64 ›› Issue (1): 233-242.DOI: 10.3969/j.issn.0438-1157.2013.01.025
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LI Xiaopei1,2, YANG Liangrong1, HUANG Kun1, LI Wensong1,2, SUN Xitong1,2, LIU Huizhou1
Received:
2012-04-25
Revised:
2012-08-02
Online:
2013-01-05
Published:
2013-01-05
Supported by:
supported by the National Natural Science Foundation of China (21106162, 21136009),the National Basic Research Program of China (2009CB219904) and the Chemical Engineering, State Key Laboratory Foundation (SKL-ChE-11A04).
李晓佩1,2, 杨良嵘1, 黄昆1, 李文松1,2, 孙西同1,2, 刘会洲1
通讯作者:
杨良嵘,刘会洲
作者简介:
李晓佩(1984—),女,博士研究生。
基金资助:
国家自然科学基金项目(21106162);国家自然科学重点基金项目(21136009);国家重点基础研究发展计划项目(2009CB219904);化学工程国家重点实验室开放基金项目(SKL-ChE-11A04)。
CLC Number:
LI Xiaopei, YANG Liangrong, HUANG Kun, LI Wensong, SUN Xitong, LIU Huizhou. Research progress of aptamer in biochemical separation and detection[J]. CIESC Journal, 2013, 64(1): 233-242.
李晓佩, 杨良嵘, 黄昆, 李文松, 孙西同, 刘会洲. 核酸适配体在生化分离及检测领域中的研究进展[J]. 化工学报, 2013, 64(1): 233-242.
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[1] | Tuerk C, Gold L.Systematic evolution of ligands by exponential enrichment:RNA ligands to bacteriophage T4 DNA polymerase[J].Science, 1990,249:505-510 |
[2] | Ellington A D, Szostak J W.In vitro selection of RNA molecules that bind specific ligands[J].Nature, 1990,346:818-822 |
[3] | Ellington A D, Szostak J W.Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures[J].Nature, 1992,355:850-852 |
[4] | Gopinath S C B.Methods developed for SELEX[J].Anal. Bioanal. Chem., 2007,387:171-182 |
[5] | Huang C J, Lin H I, Shiesh S C, Lee G B.An integrated microfluidic system for rapid screening of alpha-fetoprotein-specific aptamers[J].Biosens.Bioelectron., 2012,35:50-55 |
[6] | Calik P, Balci O,Ozdamar T H.Human growth hormone-specific aptamer identification using improved oligonucleotide ligand evolution method[J].Protein Expression Purif., 2010,69:21-28 |
[7] | Nitsche A, Kurth A, Dunkhorst A, Pnke O,Sielaff H,Junge W,Muth D,Scheller F,Stcklein W,Dahmen C,Pauli G,Kage A.One-step selection of Vaccinia virus-binding DNA aptamers by MonoLEX[J].BMC Biotech., 2007,7:48-59 |
[8] | Jing M, Bowser M T.Methods for measuring aptamer-protein equilibria:a review[J].Anal.Chim.Acta, 2011,686:9-18 |
[9] | Sumedha D J.Aptamers:an emerging class of molecules that rival antibodies in diagnostics[J].Clin.Chem., 1999,45(9):1628-1650 |
[10] | Citartan M, Gopinath S C B, Tominag J J, Tan S C, Tang T H.Assays for aptamer-based platforms[J].Biosens. Bioelectron., 2012,34:1-11 |
[11] | Feigon J, Dieckmann T, Smith F W.Aptamer structures from A to zeta[J].Chem.Biol., 1996,3:611-617 |
[12] | Patel D J.Structural analysis of nucleic acid aptamers[J].Curr.Opin.Chem.Biol., 1997,1:32-46 |
[13] | Padmanabhang K, Padmanabhang K P, Ferrarag J D.Sadle J E, Tulinsky A.The structure of a-thrombin inhibited by a 15-mer single-stranded DNA aptamer[J].J.Biol.Chem., 1993,268:17651-17654 |
[14] | Xu Y H, Yang X R, Wang E K.Review:aptamers in microfluidic chips[J].Anal.Chim.Acta, 2010,683(1):12-20 |
[15] | Zhang Y, Liu R J, Hu Y L, Li G K.Microwave heating in preparation of magnetic molecularly imprinted polymer beads for trace triazines analysis in complicated samples[J].Anal.Chem., 2009,81(3):967-976 |
[16] | Song X L, Li J H, Wang J T, Chen L X.Quercetin molecularly imprinted polymers:preparation, recognition characteristics and properties as sorbent for solid-phase extraction[J].Talanta, 2009,80(2):694-702 |
[17] | Michaud M, Jourdan E, Ravelet C.Immobilized DNA aptamers as target-specific chiral stationary phases for resolution of nucleoside and amino acid derivative enantiomers[J].Anal.Chem., 2004,76:1015-1020 |
[18] | Nguyen T H, Pei R, Stojanovic M, Lin Q.An aptamer-based microfluidic device for thermally controlled affinity extraction[J].Nanofluid, 2009,6:479-487 |
[19] | Nguyen T H, Pei R, Stojanovic M, Lin Q.Demonstration and characterization of biomolecular enrichment on microfluidic aptamer-functionalized surface[J].Sens. Actuators B, 2011,155:58-66 |
[20] | Su X Y, Hu L H, Kong L, Lei X Y, Zou H F.Affinity chromatography with immobilized DNA stationary phase for biological fingerprinting analysis of traditional Chinese medicines[J].J.Chromatogr.A, 2007:115:4132-137 |
[21] | Cruz-Aguado J A, Penner G.Determination of ochratoxin A with a DNA aptamer[J].J.Agric.Food Chem., 2008,56:10456-10461 |
[22] | Deng Q, Watson C J, Kennedy R T.An aptamer affinity chromatography for rapid assay of adenosine in microdialysis samples collected in vivo[J].J.Chromatogr.A, 2003,1005:123-130 |
[23] | Oktem H A, Bayramoglu G, Ozalp V C, Arica M Y.Single-step purification of recombinant Thermus aquaticus DNA polymerase using DNA-aptamer immobilized novel affinity magnetic beads[J].Biotechnol.Progr., 2007,23:146-154 |
[24] | Javaherian S, Musheev M U, Kanoatov M, Berezovski M V, Krylov S N.Selection of aptamers for a protein target in cell lysate and their application to protein purification[J].Nucleic Acids Res., 2009,37(8):62-71 |
[25] | Connor A C, McGown L B.Aptamer stationary phase for protein capture in affinity capillary chromatography[J].J.Chromatogr.A, 2006,1111:115-119 |
[26] | Kokpinar O, Walter J G, Shoham Y, Stahl F, Scheper T.Aptamer-based downstream processing of his-tagged proteins utilizing magnetic beads[J].Biotechnol.Bioeng., 2011,108(10):2371-2379 |
[27] | Murphy M B, Fuller S T, Richardson P M, Doyle S A.An improved method for the in vitro evolution of aptamers and applications in protein detection and purification[J].Nucleic Acids Res., 2003,31(18):110-117 |
[28] | Cho S, Lee S H, Chung W J, Kim Y K, Lee Y S, Kim B G. Microbead-based affinity chromatography chip using RNA aptamer modified with photocleavable linker[J].Electrophoresis, 2004,25:3730-3739 |
[29] | Orozco J, Campuzano S, Kagan D, Zhou M, Gao W, Wang J.Dynamic isolation and unloading of target proteins by aptamer-modified microtransporters[J].Anal.Chem., 2011,83:7962-7969 |
[30] | Zhao Q, Lu X F, Yu C G, Li X F, Le X C.Aptamer-linked assay for thrombin using gold nanoparticle amplification and inductively coupled plasma-mass spectrometry detection[J].Anal.Chem., 2009,81(17):7484-7489 |
[31] | Chen Y L, Nakamoto K, Niwa O, Corn R M.On-chip synthesis of RNA aptamer microarrays for multiplexed protein biosensing with SPR imaging measurements[J].Langmuir, 2012,28:8281-8285 |
[32] | Zaher M, Ravelet C, Baussanne I, Ravel A, Grosset C, Décout J L, Peyrin E.Chiral ligand-exchange chromatography of amino acids using porous graphitic carbon coated with a dinaphthyl derivative of neamine[J].Anal. Bioanal. Chem., 2009,393:655-660 |
[33] | Langan T J, Nyakubaya V T, Casto L D, Dolan T D, Archer-Hartmann S A, Yedlapalli S L,Sooter L J, Holland L A.Assessment of aptamer-steroid binding using stacking-enhanced capillary electrophoresis[J].Electrophoresis, 2012,33:866-869 |
[34] | Fukasawa M, Yoshida W, Yamazaki H, Sode K,Ikebukuro K.An aptamer-based bound/free separation system for protein detection[J].Electroanalysis, 2009,21(11):1297-1302 |
[35] | Zhao Qiang(赵强), Le Xiaochun(乐晓春).Recent advances in aptamer affinity chromatography[J].Chinese Journal of Chromatography(色谱), 2009,27:556-565 |
[36] | Xiao Y, Lubin A A, Heeger A J, Plaxco K W.Label-free electronic detection of thrombin in blood serum by using an aptamer-based sensor[J].Angew.Chem.Int.Ed., 2005,44:5456 -5459 |
[37] | Radi A E, Sanchez J L A, Baldrich E, O’Sullivan C K. Reagentless, reusable, ultrasensitive electrochemical molecular beacon aptasensor[J].J.Am.Chem.Soc., 2006,128:117-124 |
[38] | Polsky R, Gill R, Kaganovsky L, Willner I.Nucleic acid-functionalized Pt nanoparticles:catalytic labels for the amplified electrochemical detection of biomolecules[J].Anal.Chem., 2006,78:2268-2271 |
[39] | Centi S, Tombelli S, Minunni M, Mascini M.Aptamer-based detection of plasma proteins by an electrochemical assay coupled to magnetic beads[J].Anal.Chem., 2007,79:1466-1473 |
[40] | Eva G F, Noemde L S A, Mara J L C, Maria J L C, Arturo J M O, Paulino T B.Aptamer-based inhibition assay for the electrochemical detection of tobramycin using magnetic microparticles[J].Electroanalysis, 2011,23(1):43-49 |
[41] | Zhang D W, Sun C J, Zhang F T, Xu L, Zhou Y L, Zhang X X.An electrochemical aptasensor based on enzyme linked aptamer assay[J].Biosens.Bioelectron., 2012,31:363- 368 |
[42] | Bang G S, Cho S, Kim B G.A novel electrochemical detection method for aptamer biosensors[J].Biosens. Bioelectron., 2005, 21:863-870 |
[43] | Zhang H X, Jiang B Y, Xiang Y, Chai Y Q, Yuan R.Label-free and amplified electrochemical detection of cytokine based on hairpin aptamer and catalytic DNAzyme[J].Analyst, 2012,137:1020-1023 |
[44] | Rodriguez M C, Kawde A N, Wang J.Aptamer biosensor for label-free impedance spectroscopy detection of proteins based on recognition-induced switching of the surface charge[J].Chem.Commun., 2005:4267-4269 |
[45] | Radi A E, Sanchez J L A, Baldrich E, O’Sullivan C K. Reusable impedimetric aptasensor[J].Anal.Chem., 2005,77:6320-6323 |
[46] | Lin Z Y,Chen L F, Zhang G Y,Liu Q D,Qiu B, Cai Z W,Chen G N.Label-free aptamer-based electrochemical impedance biosensor for 17β-estradiol[J].Analyst, 2012,137:819-822 |
[47] | Su W Q, Lin M, Lee H,Cho M, Choe W S, Lee Y. Determination of endotoxin through an aptamer-based impedance biosensor[J].Biosens.Bioelectron., 2012,32:32-36 |
[48] | Yu H Z, Luo C Y, Sankar C G, Sen D.Voltammetric procedure for examining DNA-modified surfaces:quantitation, cationic binding activity, and electron-transfer kinetics[J].Anal.Chem., 2003,75:3902-3907 |
[49] | Shangguan Li(上官莉), Qi Honglan(漆红兰), Ling Chen(凌晨).Label-free and sandwich aptamer-based electrochemical biosensor for the determination of cocaine[J].Acta Chim.Sinica(化学学报), 2011,69(18):2196-2200 |
[50] | Wang L, Li Y L,Xu Y, Cheng G F, He P G, Fang Y Z. Simultaneously fluorescence detecting thrombin and lysozyme based on magnetic nanoparticle condensation[J].Talanta, 2009,79(3):557-561 |
[51] | Wang Y Y, Pu K Y, Liu B.Anionic conjugated polymer with aptamer-functionalized silica nanoparticle for label-free naked-eye detection of lysozyme in protein mixtures[J].Langmuir, 2010,26(12):10025-10030 |
[52] | Li J J, Zhong X Q, Zhang H Q, Le X C, Zhu J J.Binding-induced fluorescence turn-on assay using aptamer-functionalized silver nanocluster DNA probes[J].Anal. Chem.,2012,84:5170-5174 |
[53] | Jiang Y X, Fang X H, Bai C L. Signaling aptamer/protein binding by a molecular light switch complex[J].Anal. Chem., 2004,76:5230-5235 |
[54] | Choi J H, Chen K H, Strano M S. Aptamer-capped nanocrystal quantum dots:a new method for label-free protein detection[J].J.Am.Chem.Soc., 2006,128:15584-15585 |
[55] | Tan Y, Zhang X, Xie Y H, Zhao R, Tan C Y, Jiang Y Y. Label-free fluorescent assays based on aptamer-target recognition[J].Analyst, 2012,137:2309-2312 |
[56] | Nutiu R, Li Y F.Structure-switching signaling aptamers[J].J.Am.Chem.Soc., 2003,125:4771-4778 |
[57] | Chen J H, Fang Z Y, Liu J, Zeng L G.A simple and rapid biosensor for ochratoxin A based on a structure-switching signaling aptamer[J].Food Control, 2012,25:555-560 |
[58] | Li J J, Fang X H, Tan W H. Molecular aptamer beacons for real-time protein recognition[J].Biochem. Biophys. Res.Commun., 2002,292:31-40 |
[59] | Zheng Y, Wang Y, Yanga X R.Aptamer-based colorimetric biosensing of dopamine using unmodified gold nanoparticles[J].Sens.Actuators B, 2011,156:95-99 |
[60] | Song K M, Cho M, Jo H, Min K, Jeon S H, Kim T, Han M S, Ku J K, Ban C.Gold nanoparticle-based colorimetric detection of kanamycin using a DNA aptamer[J].Anal.Biochem., 2011,415:175-181 |
[61] | Yao C Y, Qi Y Z, Zhao Y H, Xiang Y, Chen Q H, Fu W L. Aptamer-based piezoelectric quartz crystal microbalance biosensor array for the quantification of IgE[J].Biosens. Bioelectron., 2009, 24:2499-2503 |
[62] | Tombelli S, Minunni M, Luzi E.Aptamer-based biosensorsfor the detection of HIV-1 Tat protein[J].Bioelectrochemistry, 2005,67:135- 141 |
[63] | Hianik T, Ostatna V, Zajacova Z, Stoikova E, Evtugyn G.Detection of aptamer-protein interactions using QCM and electrochemical indicator methods[J].Bioorg. Med. Chem. Lett., 2005,15:291-295 |
[64] | Chen Q, Tang W, Wang D Z, Wu X J, Li N, Liu F.Amplified QCM-D biosensor for protein based on aptamer-functionalized gold nanoparticles[J].Biosens. Bioelectron., 2010,26:575-579 |
[65] | Hianik T, Ostatna V, Sonlajtnerova M, Grman I.Influence of ionic strength, pH and aptamer configuration for binding affinity to thrombin[J].Bioelectrochemistry, 2007,70:127-133 |
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